README.md
In rintukutum/rpride: Query and download PRIDE project information with R
An R package powered by PRIDE web api. It allows r-users to retrieve project summary, detail, assay and files using PRIDE accession-ID. It uses PRIDE web API and httr package to download the content.
Install
library('devtools')
install_github('rintukutum/rpride')
Get information about a PRIDE project
# load rpride library
library('rpride')
# PRIDE ID
pxd <- 'PXD000561'
project.info <- get.project.detail(pxd)
Get all PRIDE projects
pride_projects <- get.pride.projects()
rintukutum/rpride documentation built on May 5, 2019, 1:38 p.m.
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An R package powered by PRIDE web api. It allows r-users to retrieve project summary, detail, assay and files using PRIDE accession-ID. It uses PRIDE web API and httr package to download the content.
Install
library('devtools')
install_github('rintukutum/rpride')
Get information about a PRIDE project
# load rpride library
library('rpride')
# PRIDE ID
pxd <- 'PXD000561'
project.info <- get.project.detail(pxd)
Get all PRIDE projects
pride_projects <- get.pride.projects()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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