reinitialize_freqset: Reinitialize genotype frequency from allele frequency

In rkanitz/Madgwick-Kanitz-detsims: Deterministic Simulations for Modelling Resistance Evolution

Reinitialize genotype frequency from allele frequency

Description

Reinitialize bi-allele multi-locus genotype frequency from underlying allele frequencies assuming no prior linkage disequilibrium

Usage

reinitialize_freqset(aset_added, fset, aset_add, anames, ploidy, add_loci)

Details

@param aset_added A vector with the frequency of all alleles @param fset A vector with the frequency of all genotypes @param aset_add A vector of frequencies 'f' of the focal alleles (upper-case, e.g. A) across all loci, where non-focal alleles (lower-case, e.g. a) have frequency 1-f @param anames A vector of designated letters associated with each locus, with upper-case denoting the focal allele and lower-case denoting the non-focal (e.g. A vs a) @param ploidy A vector of the ploidies of each locus @param add_loci A vector of the number of loci to be added

@return A vector of the genotype frequencies @export @examples

rkanitz/Madgwick-Kanitz-detsims documentation built on April 27, 2023, 2:55 p.m.