Man pages for rkuiper/geneClassifiers
Application of gene classifiers

bracket-methodsExtract
ClassifierParametersAn S4 class to store classifier parameters.
ClassifierResultsAn S4 class to store classifier results.
dim-methodsDimensions of an Object
exampleMAS5Example MAS5.0 ExpressionSet
FixedExpressionDataAn S4 class to store classifier parameters.
getBatchCorrection-methodsObtain the batch correction status for a classifier result.
getCitations-methodsObtain citations to the classifier
getClassifications-methodsObtain classifier classifications.
getClassifier-methodsObtain a classifier definition.
getDecisionBoundaries-methodsObtain the decision boundaries defined for the classifier.
getDescription-methodsObtain classifiers' description.
getEventChain-methodsObtain classifiers' event chain.
getIntercept-methodsObtain classifiers' intercept.
getMeans-methodsObtain classifiers' reference means.
getName-methodsObtain object names.
getNormalizationMethod-methodsObtain normalization method
getProbeNames-methodsObtain probe-set names.
getScores-methodsObtain classifier score.
getSds-methodsObtain classifiers' reference standard deviations.
getTargetValue-methodsObtain the targetValue
getTrainingData-methodsObtain classifier training data.
getWeightingType-methodsObtain the weighting type used to obtain a classifier result.
getWeights-methodsObtain classifier weights.
runClassifier-methodsPerform classification.
setNormalizationMethod-methodsPrepare data.
showClassifierList-methodsShow classifier names and descriptions.
rkuiper/geneClassifiers documentation built on May 25, 2017, 4:15 a.m.