API for rmgpanw/codemapper
Functions for Mapping Between Clinical Coding Systems
| Global functions | |
|---|---|
| %>% | Man page |
| RunCodelistBuilder | Man page Source code |
| RunCodelistBuilder_server | Source code |
| RunCodelistBuilder_ui | Source code |
| all_lkps_maps_to_db | Man page Source code |
| build_all_lkps_maps | Man page Source code |
| build_all_lkps_maps_dummy | Man page Source code |
| check_all_lkps_maps_path | Source code |
| check_codes | Source code |
| check_codes_exist | Source code |
| check_mapping_args | Source code |
| check_rowid_col_present | Source code |
| code_descriptions_like | Man page Source code |
| codemapper | Man page |
| codemapper-package | Man page |
| codemapper_metadata | Man page Source code |
| codes_starting_with | Man page Source code |
| default_col_filters | Man page Source code |
| default_overlapping_disease_categories_csv | Man page Source code |
| download_caliber_repo | Man page Source code |
| download_file | Source code |
| dummy_all_lkps_maps_path | Man page Source code |
| dummy_caliber_dir_path | Man page Source code |
| dummy_clinical_events_tidy | Man page Source code |
| dummy_icd10_phecode_map_path | Man page Source code |
| dummy_phecode_lkp_path | Man page Source code |
| dummy_ukb_codings_path | Man page Source code |
| expand_icd10_ranges | Source code |
| extend_bnf_lkp | Source code |
| extend_read_v2_drugs_bnf | Source code |
| filter_cols | Source code |
| get_caliber_categories_mapping | Man page Source code |
| get_clinical_events_source | Source code |
| get_col_for_lookup_sheet | Source code |
| get_from_to_mapping_sheet | Source code |
| get_icd10_code_alt_code_x_map | Source code |
| get_icd10_code_range | Source code |
| get_lookup_sheet | Source code |
| get_mapping_df | Man page Source code |
| get_nhsbsa_snomed_bnf | Man page Source code |
| get_phecode_definitions | Man page Source code |
| get_phecode_icd10_map | Man page Source code |
| get_phecode_icd9_map | Man page Source code |
| get_preferred_description_code_for_lookup_sheet | Source code |
| get_ukb_all_lkps_maps | Man page Source code |
| get_ukb_self_report_med_to_atc_map | Man page Source code |
| get_value_for_mapping_sheet | Source code |
| handle_unrecognised_codes | Source code |
| lookup_codes | Man page Source code |
| make_lkp_from_ukb_codings | Source code |
| make_phecode_reverse_map | Man page Source code |
| map_caliber | Source code |
| map_clinical_events_source_to_phecode | Source code |
| map_clinical_events_to_phecodes | Man page Source code |
| map_codes | Man page Source code |
| map_codes_ukb_clinical_events | Source code |
| map_icd10_to_phecode | Source code |
| read_all_lkps_maps | Man page Source code |
| read_all_lkps_maps_dummy | Man page Source code |
| read_caliber_raw | Man page Source code |
| read_csv_to_named_list_and_combine | Source code |
| read_excel_to_named_list | Source code |
| read_icd10_phecode_map_dummy | Man page Source code |
| read_phecode_lkp_dummy | Man page Source code |
| read_ukb_codings_dummy | Man page Source code |
| reformat_caliber_for_ukb | Man page Source code |
| reformat_caliber_icd10 | Source code |
| reformat_caliber_opcs4 | Source code |
| reformat_caliber_read2 | Source code |
| reformat_icd10_codes | Man page Source code |
| reformat_icd10_phecode_map_1_2 | Source code |
| reformat_icd9_icd10 | Source code |
| reformat_read_ctv3_icd10 | Source code |
| reformat_read_v2_icd10 | Source code |
| reformat_standardised_codelist | Source code |
| rm_footer_rows_all_lkps_maps_df | Source code |
| rm_or_extract_appended_icd10_dxa | Source code |
| standardise_output_fn | Source code |
| standardise_primary_care | Source code |
| standardise_secondary_care_icd10 | Source code |
| standardise_secondary_care_opcs4 | Source code |
| update_code_selection | Source code |
| validate_all_lkps_maps | Source code |
| validate_overlapping_disease_categories_df | Source code |
