Files in rmgpanw/codemapper
Functions for Mapping Between Clinical Coding Systems
.Rbuildignore
.Rprofile
.gitattributes
.github/.gitignore
.github/CONTRIBUTING.md
.github/workflows/check-standard.yaml
.github/workflows/deploy-app.yml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RunCodelistBuilder.R
R/caliber.R
R/clinical_codes.R
R/clinical_events_to_phecodes.R
R/codemapper-package.R
R/dummy.R
R/lookups_and_mappings.R
R/metadata.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
codemapper.Rproj
codemeta.json
cran-comments.md
data-raw/caliber_mapped_overlapping_disease_categories.R
inst/CITATION
inst/app/app.R
inst/extdata/caliber_mapped_overlapping_disease_categories.csv
inst/extdata/caliber_phenotype_categories_mapping.csv
inst/extdata/dummy_Codings.tsv
inst/extdata/dummy_Phecode_map_v1_2_icd10_beta.csv
inst/extdata/dummy_all_lkps_maps_v3.xlsx
inst/extdata/dummy_phecode_definitions1.2.csv
inst/extdata/test_caliber_repo/primary_care/CPRD_ESRD.csv
inst/extdata/test_caliber_repo/primary_care/CPRD_diabetes.csv
inst/extdata/test_caliber_repo/primary_care/CPRD_dm_neuro.csv
inst/extdata/test_caliber_repo/primary_care/CPRD_hypertension.csv
inst/extdata/test_caliber_repo/secondary_care/ICD_TB.csv
inst/extdata/test_caliber_repo/secondary_care/ICD_asthma.csv
inst/extdata/test_caliber_repo/secondary_care/ICD_bacterial.csv
inst/extdata/test_caliber_repo/secondary_care/ICD_chronic_fatigue.csv
inst/extdata/test_caliber_repo/secondary_care/ICD_diabetes.csv
inst/extdata/test_caliber_repo/secondary_care/OPCS_appendicitis.csv
man/all_lkps_maps_to_db.Rd
man/build_all_lkps_maps.Rd
man/build_all_lkps_maps_dummy.Rd
man/code_descriptions_like.Rd
man/codemapper-package.Rd
man/codemapper_metadata.Rd
man/codes_starting_with.Rd
man/default_col_filters.Rd
man/default_overlapping_disease_categories_csv.Rd
man/download_caliber_repo.Rd
man/dummy_all_lkps_maps_path.Rd
man/dummy_caliber_dir_path.Rd
man/dummy_clinical_events_tidy.Rd
man/dummy_icd10_phecode_map_path.Rd
man/dummy_phecode_lkp_path.Rd
man/dummy_ukb_codings_path.Rd
man/figures/README-pressure-1.png
man/get_caliber_categories_mapping.Rd
man/get_mapping_df.Rd
man/get_nhsbsa_snomed_bnf.Rd
man/get_phecode_definitions.Rd
man/get_phecode_icd10_map.Rd
man/get_phecode_icd9_map.Rd
man/get_ukb_all_lkps_maps.Rd
man/get_ukb_self_report_med_to_atc_map.Rd
man/lookup_codes.Rd
man/make_phecode_reverse_map.Rd
man/map_clinical_events_to_phecodes.Rd
man/map_codes.Rd
man/pipe.Rd
man/read_all_lkps_maps.Rd
man/read_all_lkps_maps_dummy.Rd
man/read_caliber_raw.Rd
man/read_icd10_phecode_map_dummy.Rd
man/read_phecode_lkp_dummy.Rd
man/read_ukb_codings_dummy.Rd
man/reformat_caliber_for_ukb.Rd
man/reformat_icd10_codes.Rd
man/runCodelistBuilder.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/testthat.R
tests/testthat/apps/RunCodelistBuilder/app.R
tests/testthat/apps/RunCodelistBuilder/tests/shinytest.R
tests/testthat/apps/RunCodelistBuilder/tests/shinytest/test_app_htn-expected/001.download
tests/testthat/apps/RunCodelistBuilder/tests/shinytest/test_app_htn.R
tests/testthat/test_app.R
tests/testthat/test_caliber.R
tests/testthat/test_clinical_codes.R
tests/testthat/test_clinical_events_to_phecodes.R
tests/testthat/test_dummy.R
tests/testthat/test_lookups_and_mappings.R
tests/testthat/test_metadata.R
tests/testthat/test_utils.R
vignettes/.gitignore
vignettes/caliber.Rmd
vignettes/codemapper.Rmd
vignettes/icd10_formats.Rmd
vignettes/map_codes.Rmd
vignettes/phecodes.Rmd
vignettes/references.bib
vignettes/runcodelistbuilder.jpg
