Files in rmorsomme/PDSIR
Data-augmentation Marko chain Monte Carlo for Fitting the Stochastic SIR Model to Incidence Counts
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
PDSIR.Rproj
R/MH_latent.R
R/PDSIR.R
R/SEM-process.R
R/SEM-simulate.R
R/data.R
R/gibbs-sampler.R
R/log-likelihood.R
R/run_DAMCMC.R
R/sufficient-statistics.R
R/truncated_exponential.R
R/truncated_weibull.R
R/utils.R
README.Rmd
README.md
README_cache/gfm/__packages
README_cache/gfm/unnamed-chunk-1_6c2503a85febf272153ff7efab42269a.RData
README_cache/gfm/unnamed-chunk-1_6c2503a85febf272153ff7efab42269a.rdb
README_cache/gfm/unnamed-chunk-1_6c2503a85febf272153ff7efab42269a.rdx
README_cache/gfm/unnamed-chunk-2_7e5baffe2df9f13b6e71090a017b9af9.RData
README_cache/gfm/unnamed-chunk-2_7e5baffe2df9f13b6e71090a017b9af9.rdb
README_cache/gfm/unnamed-chunk-2_7e5baffe2df9f13b6e71090a017b9af9.rdx
data-raw/ebola_gueckedou.R
data/ebola_gueckedou.rda
data/ebola_guinea_raw.rda
inst/extdata/Guinea.csv
inst/extdata/Guinea_modified.csv
man/PDSIR.Rd
man/add_beta.Rd
man/add_gamma.Rd
man/complete_theta.Rd
man/compute_Ik.Rd
man/compute_Ik_MH_fast.Rd
man/compute_pi.Rd
man/contribution_observed_removal.Rd
man/dexp_trunc_log.Rd
man/dprop_x.Rd
man/draw_trajectories.Rd
man/dweibull2.Rd
man/dweibull2_trunc_log.Rd
man/ebola_gueckedou.Rd
man/ebola_guinea_raw.Rd
man/f_log.Rd
man/figures/README-ebola-1.png
man/figures/README-ebola-histogram-1.png
man/figures/README-ebola-traceplot-1.png
man/figures/README-example-1.png
man/figures/README-pressure-1.png
man/figures/README-simulate-data-1.png
man/figures/README-synthetic-data-1.png
man/figures/README-synthetic-traceplot-1.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-6-2.png
man/figures/README-unnamed-chunk-7-1.png
man/gibbs_theta.Rd
man/observed_data.Rd
man/propose_tau_I.Rd
man/propose_tau_R.Rd
man/pweibull2.Rd
man/rexp_trunc.Rd
man/rprop_x.Rd
man/run_DAMCMC.Rd
man/rweibull2.Rd
man/rweibull2_trunc.Rd
man/simulate_SEM.Rd
man/simulate_iota.Rd
man/suff_stat.Rd
