chrome_plot: IBD segments plot
In rmunoz12/chromeR: Visualizing IBD Segments on Chromosomes

Description Usage Arguments Examples

View source: R/chrome.R

Plots the output of chrome_map.

1	chrome_plot(d, key, chromosome, length, type, title)

`d`	Dataframe output from `chrome_map`.
`key`	String that identifies the column in `d` that uniquely identifies the pair of individuals corresponding to each row.
`chromosome`	String indentifying the column in `d` that indicates the chromosome of each IBD segment.
`length`	String indentifying the column in `d` that indicates the length of each IBD segment, gap, or merge, calculated by `chrome_map`.
`type`	String indentifying the column in `d` that indicates the type of each value, calculated by `chrome_map`.
`title`	String for the plot's title.

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data(test_ibd_segments)
df <- chrome_map(test_ibd_segments, "result_id", "chromosome", "bp_start", "bp_end")
chrome_plot(df, "result_id", "chromosome", "len", "type", "Test IBD Matches")