rnabioco/clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

Getting started

Package details

Bioconductor views Annotation GeneExpression Microarray Sequencing SingleCell
LicenseMIT + file LICENSE
URL https://github.com/rnabioco/clustifyr https://rnabioco.github.io/clustifyr/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
rnabioco/clustifyr documentation built on April 23, 2024, 9:57 a.m.