clustifyrdatahub: clustifyrdatahub: reference scRNA-seq data for clustifyr
In rnabioco/clustifyrdatahub: External data sets for clustifyr in ExperimentHub
clustifyrdatahub R Documentation
clustifyrdatahub: reference scRNA-seq data for clustifyr
Description
The clustifyrdatahub package provides access to the summarized reference
count matrix data from multiple datasets used in the clustifyr manuscript
and tutorial. They are provided for future users of clustifyr, for
automated cell type classification of scRNA-seq experiments.
Details
Available datasets:
+ Mouse Cell Atlas
- [ref_MCA()]
+ Tabula Muris (10X)
- [ref_tabula_muris_drop()]
+ Tabula Muris (SmartSeq2)
- [ref_tabula_muris_facs()]
+ Mouse RNA-seq from 28 cell types
- [ref_mouse.rnaseq()]
+ Mouse Organogenesis Cell Atlas (main cell types)
- [ref_moca_main()]
+ Mouse sorted immune cells
- [ref_immgen()]
+ Human hematopoietic cell microarray
- [ref_hema_microarray()]
+ Human cortex development scRNA-seq
- [ref_cortex_dev()]
+ Human pancreatic cell scRNA-seq (inDrop)
- [ref_pan_indrop()]
+ Human pancreatic cell scRNA-seq (SmartSeq2)
- [ref_pan_smartseq2()]
rnabioco/clustifyrdatahub documentation built on Nov. 11, 2023, 4:21 a.m.
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| clustifyrdatahub | R Documentation |
clustifyrdatahub: reference scRNA-seq data for clustifyr
Description
The clustifyrdatahub package provides access to the summarized reference count matrix data from multiple datasets used in the clustifyr manuscript and tutorial. They are provided for future users of clustifyr, for automated cell type classification of scRNA-seq experiments.
Details
Available datasets:
+ Mouse Cell Atlas - [ref_MCA()] + Tabula Muris (10X) - [ref_tabula_muris_drop()] + Tabula Muris (SmartSeq2) - [ref_tabula_muris_facs()] + Mouse RNA-seq from 28 cell types - [ref_mouse.rnaseq()] + Mouse Organogenesis Cell Atlas (main cell types) - [ref_moca_main()] + Mouse sorted immune cells - [ref_immgen()] + Human hematopoietic cell microarray - [ref_hema_microarray()] + Human cortex development scRNA-seq - [ref_cortex_dev()] + Human pancreatic cell scRNA-seq (inDrop) - [ref_pan_indrop()] + Human pancreatic cell scRNA-seq (SmartSeq2) - [ref_pan_smartseq2()]
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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