rnabioco/djvdj: A collection of single-cell V(D)J tools
djvdj provides a single-cell V(D)J analysis workflow that integrates with popular single-cell data structures. This includes the ability to cluster CDR3 sequences and to quantify repertoire diversity, repertoire similarity, and gene segment usage. Tools are also provided to generate a variety of visualizations including rarefaction curves, circos plots and UMAP projections.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | RNASeq Sequencing SingleCell Software |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.1.0 |
| URL | https://rnabioco.github.io/djvdj/ https://github.com/rnabioco/djvdj/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
