extractTC: Tripeptide Composition Descriptor
In road2stat/protr: Generating Various Numerical Representation Schemes for Protein Sequences
extractTC R Documentation
Tripeptide Composition Descriptor
Description
This function calculates the Tripeptide Composition descriptor (dim: 8,000).
Usage
extractTC(x)
Arguments
x
A character vector, as the input protein sequence.
Value
A length 8,000 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractAAC and extractDC
for Amino Acid Composition and Dipeptide Composition descriptors.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractTC(x)
road2stat/protr documentation built on April 20, 2024, 4:49 a.m.
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| extractTC | R Documentation |
Tripeptide Composition Descriptor
Description
This function calculates the Tripeptide Composition descriptor (dim: 8,000).
Usage
extractTC(x)
Arguments
x |
A character vector, as the input protein sequence. |
Value
A length 8,000 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractAAC and extractDC
for Amino Acid Composition and Dipeptide Composition descriptors.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractTC(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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