calcMSI: 'calcMSI' - Calculate multispecies indicator.

In robboyd/wrappeR:

calcMSI - Calculate multispecies indicator.

Description

This function takes the output of applyFilters and produces a multispecies indicator using the chosen method.

Usage

calcMSI(dat, method, write, outPath, plotLabel, bmaInd = NULL, ...)

Arguments

dat	String. Object returned by applyFilters.
method	String. Which indicator method to use. One of "lambda" or "BMA".
write	Logical. Whether or not to write the outputs to file.
outPath	String. Where to store the outputs if write = TRUE.
plotLabel	String. Title for the indicator plot.
bmaInd	String. Use "prime" if all species data are available for all species in all years, and "reg" otherwise. See Freeman et al. 2020 for details.
...	String. Title for the indicator plot.Additional arguments to be passed to BRCindicators::bma

Value

An list with elements indicator, short term assessment, long term assessment and plot.

robboyd/wrappeR documentation built on Nov. 18, 2022, 10:30 a.m.