IndGOterm package is a tool for screening dysregulation terms from personalized patients.
Formally, the intact flow of this package as follows:
Screening of stable gene pairs use function
Screening of reverse gene pairs use function
Screening of candidate disease-related-terms use function
Screening of nonredundant disease-related-terms use function
* Individual application use function
Besides, annother function
getterm.gene is used to preprocess the document of GO database.
If users intend to screen all the dysregulation terms within one patient, they can choose to skip step2-4 and directly proceed with function
You can install it from Github using the devtools pakage
Or you can download the .ZIP file and unzip it.
install.packages("IndGOterm",repos = NULL,type="source")
Please don't hesitate to address comments/questions/suggestions regarding this R package to: Jiashuai Zhang firstname.lastname@example.org
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