R/package.R

In robertsehlke/SETHRO: Simple Enrichment Testing for Highly Redundant Ontologies

#' @title Package SETHRO
#' 
#' @description 
#' Simple Enrichment Testing for Highly Redundant Ontologies
#' 
#' @details
#' Functions:\cr
#' \code{\link{clusteredEnrichmentGO}} - calculate gene set enrichment with subsequent clustering of redundant terms.\cr
#' \code{\link{createAnnotationMatrix}} - creates a sparse annotation matrix from a names list of gene identifiers.\cr
#' \code{\link{createGoMatrix}} - creates a sparse annotation matrix using a bioconductor annotation package.\cr
#' \code{\link{plotClusteredEnrichment}} - plots primary terms from a \link{clusteredEnrichmentGO} result.\cr 
#' 
#' @name SETHRO-package
#' @aliases SETHRO
#' 
#' @author 
#' Robert Sehlke
#' 
#' @docType package

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