Man pages for robjohnnoble/ggmuller
Create Muller Plots of Evolutionary Dynamics
| add_empty_pop | Modify a dataframe to enable plotting of populations instead... |
| add_root_row | Add a row to the edges list to represent the root node (if... |
| add_start_points | Add rows to a population dataframe to ensure genotype... |
| adj_matrix_to_tree | Create a tree object of class "phylo" from an adjacency... |
| branch_singles | Add branches of length zero to get rid of single nodes in an... |
| example_df | Example dataframe |
| example_edges | Example adjacency matrix |
| example_pop_df | Example population dataframe |
| find_start_node | Move to top of adjacency matrix |
| get_Adj | Get adjacency list of a tree. |
| get_edges | Extract an adjacency matrix from a larger data frame |
| get_Muller_df | Create a data frame from which to create a Muller plot |
| get_population_df | Extract population data from a larger data frame |
| move_down | Move to daughter in adjacency matrix |
| move_right | Move to sibling in adjacency matrix |
| move_up | Move to parent in adjacency matrix |
| Muller_plot | Draw a Muller plot of frequencies using ggplot2 |
| Muller_pop_plot | Draw a Muller plot of population sizes using ggplot2 |
| path_vector | Record a path through all nodes of an adjacency matrix |
| path_vector_new | Faster way to record a path through all nodes of an adjacency... |
| reorder_by_vector | Reorder a Muller plot dataframe by a vector |
