iterative.proc: Iterative procedure to select the optimal window width

In robyn-ball/PMCA: Permutation-based Maximum Covariance Analysis

Description

Iterative procedure to select the optimal window width

Usage

iterative.proc(
  scores,
  alpha = 0.05,
  w,
  tau = 1,
  method = "overall",
  by = 3,
  rowterms,
  plot = TRUE
)

Arguments

scores	3 dimensional array of the distance scores between Zx and Zy
alpha	numeric value for FPR cutoff
w	numeric vector of length n of starting window widths for thecomponents
tau	numeric value for the scaling value in the window width calculation
method	string "overall" or "each" describing the FPR calculation
by	numeric integer <= n: that the FPR <= alpha by this component
rowterms	vector of string values that denotes names of the elements in Y
plot	logical TRUE or FALSE

Value

a list of the FPR (array of FPRs), wopt (optimal window width), and tau (end scaling factor)

Examples

see README

robyn-ball/PMCA documentation built on Dec. 31, 2020, 3:10 a.m.