addPathogen: Adding a pathogen to the model

In rocheben/ibmR: Individual-Based Model in R for phylodynamics studies

Description

Adding a pathogen to the model

Usage

addPathogen(modelObject, mutationRate, crossProtection, probaInfection,
  latencyPeriod, infectiousPeriod, recoveryPeriod, name = NULL)

Arguments

modelObject	the scheduler object for which the populations has to be added
mutationRate	Mutation rate of the pathogen for each population
crossProtection	Factor for intra-specific pathogen cross protection
latencyPeriod	Latency period of the pathogen for each population
infectiousPeriod	Infectious period of the pathogen for each population
recoveryPeriod	Immunity period of the pathogen for each population
name	(optional) Name of the pathogen
probInfection	Probability of infection upon contact for each population

Value

an object of class scheduler for update purpose

rocheben/ibmR documentation built on May 5, 2019, 1:39 p.m.