Files in rodrigarc/RepertoiR
Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/basilisk.R
R/df_to_fasta.R
R/fcs_plot.R
R/fcs_processing.R
R/igblast.R
R/quality_report.R
R/scifer.R
R/secondary_peaks.R
R/summarise_abi_file.R
R/summarise_quality.R
README.md
configure
configure.win
inst/CITATION
inst/README.md
inst/extdata/fcs_index_sorting/E18_02.fcs
inst/extdata/fcs_index_sorting/E18_03.fcs
inst/extdata/fcs_index_sorting/E18_04.fcs
inst/extdata/fcs_index_sorting/E18_C1.fcs
inst/extdata/sorted_sangerseq/E18_C1/A12_3_IgG_Inner.ab1
inst/extdata/sorted_sangerseq/E18_C1/A1_3_IgG_Inner.ab1
inst/extdata/sorted_sangerseq/E18_C1/A6_3_IgG_Inner.ab1
inst/extdata/sorted_sangerseq/E18_C1_R/A1_3_IgG_Inner_R.ab1
inst/extdata/sorted_sangerseq/E18_C1_R/A6_3_IgG_Inner_R.ab1
inst/extdata/test_fasta/E18.fasta
inst/extdata/test_fasta/KIMDB_rm/D.fasta
inst/extdata/test_fasta/KIMDB_rm/J.fasta
inst/extdata/test_fasta/KIMDB_rm/V.fasta
inst/extdata/test_fasta/test_igblast.txt
inst/rmd/HC_individualized_report.Rmd
inst/rmd/HC_report.Rmd
inst/script/extdata_description.txt
inst/script/igblastwrap.py
man/df_to_fasta.Rd
man/fcs_plot.Rd
man/fcs_processing.Rd
man/figures/logo.png
man/igblast.Rd
man/quality_report.Rd
man/scifer.Rd
man/secondary_peaks.Rd
man/summarise_abi_file.Rd
man/summarise_quality.Rd
tests/testthat.R
tests/testthat/test-df_to_fasta.R
tests/testthat/test-fcs_plot.R
tests/testthat/test-fcs_processing.R
tests/testthat/test-igblast.R
tests/testthat/test-quality_report.R
tests/testthat/test-secondary_peaks.R
tests/testthat/test-summarise_abi_file.R
tests/testthat/test-summarise_quality.R
vignettes/.gitignore
vignettes/scifer_walkthrough.Rmd
