NEWS.md

In rodrigarc/RepertoiR: Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences

scifer 1.8.0

NEW FEATURES

New igblast wrapper function to run igblast on fasta sequences

igblast function returns the output from a local igblast run with any custom database

New function requires additional steps for ARM processors, please read the README

scifer 1.7.1 (2024-04-24)

BUG FIXES Fix compensation bug due to different compensation matrix positions in different .fcs file versions update minor nomenclature to AIRR-standards, column file_ID to sequence_id * Fix error of HC_individualized_report.Rmd file not being found

NEW FEATURES * Update quality thresholds based on a large B cell receptor test dataset

scifer 0.99.4 (2022-10-31)

• Version bump to bioconductor, updated description

scifer 0.99.3 (2022-09-20)

BUG FIXES

• Fix NOTE when building on windows computer

scifer 0.99.2 (2022-09-08)

NEW FEATURES

• Update vignette according to Bioconductor
• Added unit tests for functions

SIGNIFICANT USER-VISIBLE CHANGES

• Split function fcs_processing() into two functions:
• fcs_processing()
• fcs_plot()

BUG FIXES

• Minor changes to avoid possible bugs

scifer 0.99.1 (2022-08-26)

• Version bump to fix Bioconductor building error

scifer 0.99.0 (2022-08-10)

• Adapting package for Bioconductor submission

scifer 0.98.0 (2022-08-09)

• Major changes in functions
• nomenclature and all documentation were added following R style guidelines
• Processing flow cytometry data and adding to the quality_report() function

scifer 0.1.0 (2022-04-15)

• Submitted to GitHub

scifer 0.0.1 (2020-08-10)

• Primordial package created with simple functions and bugs

rodrigarc/RepertoiR documentation built on Aug. 14, 2024, 6:29 a.m.