clr_variance: Calculate CLR variances of each feature
In roeder/codaqol: Quality of Life Functions for Compositional Data
Description
Usage
Arguments
Value
Examples
Description
Calculate CLR variances of each feature
Usage
1
clr_variance(matrix, sorted = F)
Arguments
matrix
matrix containing CLR values
sorted
logical vector: should variance values be returned in
decreasing order
Value
named vector
Examples
1
2
3
4
5
milk_clr <- t(apply(mammalsmilk, 1, function(x){log(x) - mean(log(x))}))
clr_variance(milk_clr)
# Show 5 genes with highest CLR variance across dataset
clr_variance(sewage_clr, sorted = TRUE)[1:5]
roeder/codaqol documentation built on Nov. 5, 2019, 3:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Calculate CLR variances of each feature
Usage
1 | clr_variance(matrix, sorted = F)
|
Arguments
matrix |
matrix containing CLR values |
sorted |
logical vector: should variance values be returned in decreasing order |
Value
named vector
Examples
1 2 3 4 5 | milk_clr <- t(apply(mammalsmilk, 1, function(x){log(x) - mean(log(x))}))
clr_variance(milk_clr)
# Show 5 genes with highest CLR variance across dataset
clr_variance(sewage_clr, sorted = TRUE)[1:5]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.