buildCohort: Create the exposure and outcome cohorts

In rohit43/DiabetesTxPath: Learning Effective Clinical Treatment Pathways for Type-2 Diabetes from Observational Data

Description

Create the exposure and outcome cohorts

Usage

buildCohort(connectionDetails, cdmDatabaseSchema, resultsDatabaseSchema,
  treatment, comparator, outComeId)

Arguments

connectionDetails	An object of type connectionDetails as created using the createConnectionDetails function in the DatabaseConnector package.
cdmDatabaseSchema	Schema name where your patient-level data in OMOP CDM format resides. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'.
resultsDatabaseSchema	Schema name where intermediate data can be stored. You will need to have write priviliges in this schema. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'.
treatment	The name of the of treatment cohort that you want to creat, for example treatment = c("BigToBig.sql) will creat treatment cohort of patients who start with Biguanide and remain on it.
comparator	The name of the comparator cohort that you want to create, for example comparator = c("SulfToSulf.sql) will create comparator cohort with respect to treatment cohort above.
outComeId	The outcome Id of interest.

Details

This function will create treatment, comparator and outcomes cohort as included in this package.

rohit43/DiabetesTxPath documentation built on May 27, 2019, 1:46 p.m.