Man pages for rolandrolandroland/rTEM
R package for statistical analysis of TEM data
| average_relabelings | Average relabelings |
| average_relabelings_v01 | Average relabelings |
| calc_p_value | Get p value |
| calc_summary_funcs | function to calculate all summary functions on point pattern |
| calc_T_val_envs | T Value for envelope |
| calc_T_val_observed | T value for observed |
| calc_T_vals_v01 | Calculate T value |
| combine_rank | Combine ranks |
| create_groups | Create Multimers around guest type points |
| create_groups_dev | Create Multimers around guest type points |
| data_frame_list_averager | Average data frames |
| feat_list_to_wide | Convert list of features to wide format |
| findNearestPoints | Find Points |
| findNearestPoints_dep | Find Points |
| func_rcp_simple_v01 | Create RCP Pattern with same intensity and number of points... |
| Gest_nn | Advanced Nearest Neighbour Distance Function G |
| get_features | Get Features |
| get_features_deprecated | Get Features deprecated Dec 19 2024 |
| get_maxes | Get max or min |
| get_png_square | assemble png files into a png square |
| get_png_square_deprecated | assemble png files into a png square deprecated Dec 20 2024 |
| get_ranks | Get Ranks |
| get_tables | Get and save ordered tables for feature values of functions |
| get_tall | Get tall data from list of lists |
| multimersim | Multimer Simulation |
| multimersim_dev | Multimer Simulation (development) |
| multimersim_inhibit | Multimer Simulation with Overlying point pattern |
| multimersim_inhibit_dev | Multimer Simulation with Overlying point pattern (Under... |
| multimersim_mix | Mixed Multimer Simulation |
| multimersim_v01 | Simulate 2D Multimers |
| multimersim_v02 | Multimer Simulation Version 02 |
| multimersim_v03 | Multimer Simulation Version 03 |
| multimers_relab_v01 | Relabel multimers |
| neighbors | Neighbors in shell |
| nn_binom | nn_binom |
| nndist_func_plotter | nndist plotter and saver |
| nn_dist_perc_table | Plot and Save Histograms of nndist function |
| nndist_subset | nndist_subset |
| percent_neighbors | Fraction of all neighbors within a distance that are same... |
| pick_neighbor | Pick Neighbor |
| plot_p_vals | Plot p values functions |
| plot_summary | Plot summary functions |
| plot_summary_240911 | Plot summary functions (deprecated 240911) |
| plot_summary_dev | Plot summary functions - developement version |
| plot_summary_raw_v01 | Plot summary functions raw V01 (Deprecated) |
| plot_summary_v01 | Plot Summary functions |
| plot_summary_v02 | Plot summary functions (version 2, deprecated) |
| pp3_collapse | Collpase pp3 into ppp |
| pp3_downsizer | pp3 downsizer |
| rcp_simple_relab_v01 | Perform num_relabs relabelings DEPRACATED now use relabler |
| relabeler_2d_deprecated | 2D relabeling function |
| relabel_summarize | Relabel input point pattern and calcluate summary functions |
| rescale_pattern | rescale_pattern Function |
| stack_png_to_pdf | Stack png files into a pdf |
| stack_png_to_png | Stack png files into a png file |
| tiler | Tiler function |
| tile_relabel | Tile and then relabel |
| T_test | Perform T Test |
| UPP_preprocess | Preprocess UPP data |
| UPP_preprocess_dev | Preprocess UPP data (developement version) |
