localComm: The local community of a 'roleData'

In role-model/roleR: Rules of Life Engine

The local community of a 'roleData'

Description

An S4 class to specify the state of a local community

Usage

localComm(indSpecies, indTrait, indSeqs, spGenDiv)

Arguments

indSpecies	indSpecies
indTrait	indTrait
indSeqs	indSeqs
spGenDiv	spGenDiv

Slots

indSpecies

a numeric vector of the species IDs for each individual

indTrait

a numeric vector of the trait values for each individual

indSeqs

a character vector of the gene sequences for each individual

spGenDiv

a numeric vector of the genetic diversities for each species

spTrait

a numeric vector of the mean trait value of each species

spAbund

a numeric vector of the abundance (number of individuals) of each species

spAbundHarmMean

numeric vector of the harmonic mean of species abundances

spLastOriginStep

numeric vector holding time of most recent origin of each species in the local community

spExtinctionStep

numeric vector of most recent extirpation step of each species in the local community

equilibProp

numeric proportion of equilibrium achived

role-model/roleR documentation built on April 3, 2025, 1:06 p.m.