Man pages for roliveros-ramos/osmose
Object Oriented Simulator of Marine Ecosystems
| cacheManager | Manage the cache |
| configureCalibration | Reads calibration parameters from an osmose.config list. |
| dot-osmose.barplot | Plots a barplot, with xlabels rotated with a 45degree angle |
| dot-osmose.format_data_stacked | Reformat the data into the ggplot2 stacked plot format. It... |
| dot-plot_osmose_dietMatrix | Plots diet matrix |
| dot-read_2D | Generic function to read 2D output files (dietMatrix,... |
| dot-read_osmose_ncdf | Function to read osmose netcdf files |
| get_var | Get variable from an 'osmose'-like object. |
| get_var.osmose | get_var method for osmose outputs objects |
| get_var.osmose.config | get_var method for osmose configuration objects |
| initialize_osmose | Create initialization file for an OSMOSE configuration |
| osmose_calib_demo | Generates Osmose configuration files to run an Osmose demo. |
| osmose_demo | Generates required OSMOSE configuration files to run a demo. |
| osmose_grid | create OSMOSE ncdf grid (in development) |
| osmose-package | OSMOSE: Modelling Marine Exploited Ecosystems |
| plot.osmose | Plot method for osmose objects |
| plot.osmose.config | Plot method for 'osmose.config' objects |
| print.osmose | Print information for an 'osmose' object |
| print.summary.osmose | Print the summary informations about Osmose outputs |
| read_osmose | Read OSMOSE outputs into an R object |
| readOsmoseConfiguration | Reads Osmose configuration files. |
| readOsmoseFiles | Read Osmose output file |
| report | Report method |
| report.osmose | Report method for 'osmose' objects |
| run_osmose | Run an OSMOSE configuration |
| summary.osmose | 'osmose' object summaries |
| summary.osmose.dietMatrix | Title |
| summary.osmose.mortalityRate | Title |
| updateCache | Update the cache for the different function |
| update_ltl | Update LTL ncdf files to version 4 format |
| update_maps | Update OSMOSE maps from csv (v3.x) to ncdf (v4.2+) |
| update_osmose | Update OSMOSE configuration |
| write_osmose | Write data in osmose format |
