osmose2R | R Documentation |
This function create object of class osmose
with the
outputs from OSMOSE in the path
folder.
osmose2R(path = NULL, version = "v3r2", species.names = NULL, ...) read_osmose( path = NULL, input = NULL, version = "4.3.2", species.names = NULL, absolute = TRUE, ... )
path |
Path to the directory containing OSMOSE outputs. |
version |
OSMOSE version used to run the model. |
species.names |
Display names for species, overwrite the species names provided to the OSMOSE model. Used for plots and summaries. |
... |
Additional arguments. |
input |
Path to a main OSMOSE configuration file. |
absolute |
Whether the path is absolute ( |
read_osmose
will return a list of fields with the information
of whether an OSMOSE running or the configuration that is going to be used in
a running. Output class will depend on the read info: If path
is
specified, output class will be osmose
; otherwise, if ONLY input
is given, the class will be osmose.config
. If both are specified, the
osmose
class output will content inside a field (config
) of
class osmose.config
.
Individual elements can be extracted using the get_var function.
Ricardo Oliveros-Ramos, Laure Velez
# Read outputs generated by demo (check osmose_demo function) outdir = cacheManager("outputs") read_osmose(path = outdir)
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