LDscores: LD scores values
In rondolab/PleiotropyScore: The HOPS (HOrizontal Pleiotropy Score) package allows to compute the Horizontal pleiotropy score as described in Jordan et al.
Description
Usage
Format
References
Description
LD scores downloaded from <https://data.broadinstitute.org/alkesgroup/LDSCORE/1000G_Phase3_baseline_v1.1_ldscores.tgz> and compiled into a data.frame). LD scores are used in 'GetPleiotropyScore()'
Usage
1
data("LDscores")
Format
A data frame with 1,190,321 observations on the following 4 variables.
CHRa numeric vector of chromosome number.
SNPa character vector of RS ids (build 38).
BPa numeric vector of chomosomal position.
baseL2a numeric vector of LD scores.
References
Daniel Jordan*, Marie Verbanck* and Ron Do. HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases. Genome Biology 20, 222 (2019).
rondolab/PleiotropyScore documentation built on Aug. 4, 2020, 2:13 a.m.
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Description Usage Format References
Description
LD scores downloaded from <https://data.broadinstitute.org/alkesgroup/LDSCORE/1000G_Phase3_baseline_v1.1_ldscores.tgz> and compiled into a data.frame). LD scores are used in 'GetPleiotropyScore()'
Usage
1 | data("LDscores")
|
Format
A data frame with 1,190,321 observations on the following 4 variables.
CHRa numeric vector of chromosome number.
SNPa character vector of RS ids (build 38).
BPa numeric vector of chomosomal position.
baseL2a numeric vector of LD scores.
References
Daniel Jordan*, Marie Verbanck* and Ron Do. HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases. Genome Biology 20, 222 (2019).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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