getMetaGenomeSummary: Retrieve the assembly_summary.txt file from NCBI genbank...

In ropensci/biomartr: Genomic Data Retrieval

Retrieve the assembly_summary.txt file from NCBI genbank metagenomes

Description

Retrieval function of the assembly_summary.txt file from NCBI genbank metagenomes. This files stores all available metagenome projects on NCBI Genbank.

Usage

getMetaGenomeSummary(
  local_file = file.path(cachedir(), "assembly_summary_metagenomes_genbank.txt")
)

Arguments

local_file

where to store this backend file, default: file.path(cachedir(), "assembly_summary_metagenomes_genbank.txt")

Value

a tibble table

Author(s)

Hajk-Georg Drost

See Also

getKingdomAssemblySummary, getSummaryFile

Examples

## Not run: 
meta.summary <- getMetaGenomeSummary()
meta.summary

## End(Not run)

ropensci/biomartr documentation built on Feb. 4, 2025, 3:37 p.m.