rbladj | R Documentation |
Run Phylocom's bladj from R
rbladj(tree, ages)
tree |
(character/phylo) One of: phylogeny as a newick string (will be
written to a temp file) - OR path to file with a newick
string - OR a an ape |
ages |
(data.frame/character) ages data.frame, or path to an ages file. required. |
uses phylocomr::ph_bladj()
under the hood
Newick formatted tree as phylo
object
## Not run: library("phylocomr") # make an ages data.frame ages_df <- data.frame( a = c('malpighiales','eudicots','ericales_to_asterales','plantaginaceae', 'malvids', 'poales'), b = c(81, 20, 56, 76, 47, 71) ) # read phylogeny file as a string phylo_file <- system.file("examples/phylo_bladj", package = "phylocomr") phylo_str <- readLines(phylo_file) # Run Bladj, returns phylo object (x <- rbladj(tree = phylo_str, ages = ages_df)) # load ape and plot tree library(ape) plot(x) ## End(Not run)
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