sd_overall: Compute MCTQ overall sleep duration (only for MCTQ Shift)

In ropensci/mctq: Munich ChronoType Questionnaire Tools

Compute MCTQ overall sleep duration (only for MCTQ^{Shift})

Description

sd_overall() computes the overall sleep duration in a particular shift for the shift version of the Munich ChronoType Questionnaire (MCTQ).

See sd_week() to compute the average weekly sleep duration for the standard and micro versions of the MCTQ.

Usage

sd_overall(sd_w, sd_f, n_w, n_f)

Arguments

sd_w	A Duration object corresponding to the sleep duration between two days in a particular shift from a shift version of the MCTQ questionnaire. You can use sdu() to compute it.
sd_f	A Duration object corresponding to the sleep duration between two free days after a particular shift from a shift version of the MCTQ questionnaire. You can use sdu() to compute it.
n_w	An integerish numeric object or an integer object corresponding to the number of days worked in a particular shift within a shift cycle from a shift version of the MCTQ questionnaire.
n_f	An integerish numeric object or an integer object corresponding to the number of free days after a particular shift within a shift cycle from a shift version of the MCTQ questionnaire.

Details

Standard MCTQ functions were created following the guidelines in Roenneberg, Wirz-Justice, & Merrow (2003), Roenneberg, Allebrandt, Merrow, & Vetter (2012), and from The Worldwide Experimental Platform (theWeP, n.d.).

\muMCTQ functions were created following the guidelines in Ghotbi et al. (2020), in addition to the guidelines used for the standard MCTQ.

MCTQ^{Shift} functions were created following the guidelines in Juda, Vetter, & Roenneberg (2013), in addition to the guidelines used for the standard MCTQ.

See the References section to learn more.

Class requirements

The mctq package works with a set of object classes specially created to hold time values. These classes can be found in the lubridate and hms packages. Please refer to those package documentations to learn more about them.

Rounding and fractional time

Some operations may produce an output with fractional time (e.g., "19538.3828571429s (~5.43 hours)", 01:15:44.505). If you want, you can round it with mctq:::round_time().

Our recommendation is to avoid rounding, but, if you do, make sure that you only round your values after all computations are done. That way you avoid round-off errors.

Value

A Duration object corresponding to the vectorized weighted mean of sd_w and sd_f with n_w and n_f as weights.

Guidelines

Juda, Vetter, & Roenneberg (2013) and The Worldwide Experimental Platform (n.d.) guidelines for sd_overall() (\emptyset SD) computation are as follows.

Notes

• This computation must be applied to each section of the questionnaire. If you're using the three-shift design proposed by the MCTQ authors, you need to compute three overall sleep duration (e.g., \emptyset SD^M; \emptyset SD^E; \emptyset SD^N).

• The overall sleep duration is the weighted average of the shift-specific mean sleep durations.

• If you are visualizing this documentation in plain text, you may have some trouble understanding the equations. You can see this documentation on the package website.

Computation

\emptyset SD^{M/E/N} = \frac{(SD_{W}^{M/E/N} \times n_{W}^{M/E/N}) + (SD_{F}^{M/E/N} \times n_{F}^{M/E/N})}{n_W^{M/E/N} + n_{F}^{M/E/N}}

Where:

• \emptyset SD^{M/E/N} = Overall sleep duration in a particular shift.

• SD_W^{M/E/N} = Sleep duration between two days in a particular shift.

• SD_F^{M/E/N} = Sleep duration between two free days after a particular shift.

• n_W^{M/E/N} = Number of days worked in a particular shift within a shift cycle.

• n_F^{M/E/N} = Number of free days after a particular shift within a shift cycle.

* W = Workdays; F = Work-free days, M = Morning shift; E = Evening shift; N = Night shift.

References

Ghotbi, N., Pilz, L. K., Winnebeck, E. C., Vetter, C., Zerbini, G., Lenssen, D., Frighetto, G., Salamanca, M., Costa, R., Montagnese, S., & Roenneberg, T. (2020). The \muMCTQ: an ultra-short version of the Munich ChronoType Questionnaire. Journal of Biological Rhythms, 35(1), 98-110. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1177/0748730419886986")}

Juda, M., Vetter, C., & Roenneberg, T. (2013). The Munich ChronoType Questionnaire for shift-workers (MCTQ^{Shift}). Journal of Biological Rhythms, 28(2), 130-140. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1177/0748730412475041")}

Roenneberg T., Allebrandt K. V., Merrow M., & Vetter C. (2012). Social jetlag and obesity. Current Biology, 22(10), 939-43. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cub.2012.03.038")}

Roenneberg, T., Wirz-Justice, A., & Merrow, M. (2003). Life between clocks: daily temporal patterns of human chronotypes. Journal of Biological Rhythms, 18(1), 80-90. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1177/0748730402239679")}

The Worldwide Experimental Platform (n.d.). MCTQ. https://www.thewep.org/documentations/mctq/

See Also

Other MCTQ functions: fd(), gu(), le_week(), msf_sc(), msl(), napd(), sd24(), sd_week(), sdu(), sjl(), sjl_sc(), sjl_weighted(), so(), tbt()

Examples

## Scalar example

sd_w <- lubridate::dhours(5)
sd_f <- lubridate::dhours(9)
n_w <- 2
n_f <- 2
sd_overall(sd_w, sd_f, n_w, n_f)
#> [1] "25200s (~7 hours)" # Expected

sd_w <- lubridate::dhours(3.45)
sd_f <- lubridate::dhours(10)
n_w <- 3
n_f <- 1
sd_overall(sd_w, sd_f, n_w, n_f)
#> [1] "18315s (~5.09 hours)" # Expected

sd_w <- lubridate::as.duration(NA)
sd_f <- lubridate::dhours(12)
n_w <- 4
n_f <- 4
sd_overall(sd_w, sd_f, n_w, n_f)
#> [1] NA # Expected

## Vector example

sd_w <- c(lubridate::dhours(4), lubridate::dhours(7))
sd_f <- c(lubridate::dhours(12), lubridate::dhours(9))
n_w <- c(3, 4)
n_f <- c(2, 4)
sd_overall(sd_w, sd_f, n_w, n_f)
#> [1] "25920s (~7.2 hours)" "28800s (~8 hours)"  # Expected

## Checking second output from vector example

if (requireNamespace("stats", quietly = TRUE)) {
    i <- 2
    x <- c(sd_w[i], sd_f[i])
    w <- c(n_w[i], n_f[i])
    lubridate::as.duration(stats::weighted.mean(x, w))
}
#> [1] "28800s (~8 hours)" # Expected

## Converting the output to 'hms'

sd_w <- lubridate::dhours(4.75)
sd_f <- lubridate::dhours(10)
n_w <- 5
n_f <- 2
sd_overall(sd_w, sd_f, n_w, n_f)
#> [1] "22500s (~6.25 hours)" # Expected

hms::as_hms(as.numeric(sd_overall(sd_w, sd_f, n_w, n_f)))
#> 06:15:00 # Expected

## Rounding the output at the seconds level

sd_w <- lubridate::dhours(5.9874)
sd_f <- lubridate::dhours(9.3)
n_w <- 3
n_f <- 2
sd_overall(sd_w, sd_f, n_w, n_f)
#> [1] "26324.784s (~7.31 hours)" # Expected

mctq:::round_time(sd_overall(sd_w, sd_f, n_w, n_f))
#> [1] "26325s (~7.31 hours)" # Expected

ropensci/mctq documentation built on Oct. 15, 2024, 2:14 p.m.