filter: Filter a OneKP object

In ropensci/onekp: Retrieve Data from the 1000 Plants Initiative (1KP)

Filter a OneKP object

Description

Filter a OneKP object

Usage

filter_by_code(x, code)

filter_by_clade(x, clade)

filter_by_species(x, species)

Arguments

x	OneKP object
code	character vector of 1KP IDs (e.g. URDJ)
clade	vector of clade-level NCBI taxonomy IDs or scientific names
species	vector of species-level scientific names or NCBI taxonomy IDs

Value

OneKP object

Examples

data(onekp)

# filter by 1KP ID
filter_by_code(onekp, c('URDJ', 'ROAP'))

# filter by species name
filter_by_species(onekp, 'Pinus radiata')

# filter by species NCBI taxon ID
filter_by_species(onekp, 3347)

# filter by clade name scientific name
filter_by_clade(onekp, 'Brassicaceae')

# filter by clade NCBI taxon ID
filter_by_clade(onekp, 3700)

ropensci/onekp documentation built on April 16, 2023, 11:27 p.m.