In ropensci/originr: Fetch Species Origin Data from the Web

originr

knitr::opts_chunk$set(
  warning = FALSE,
  message = FALSE,
  collapse = TRUE,
  comment = "#>"
)

Species Origin Data

Data sources:

• Encyclopedia of Life http://eol.org
• Flora Europaea http://rbg-web2.rbge.org.uk/FE/fe.html
• Global Invasive Species Database http://www.iucngisd.org/gisd
• Native Species Resolver http://bien.nceas.ucsb.edu/bien/tools/nsr/nsr-ws/
• Integrated Taxonomic Information Service http://www.itis.gov/
• Global Register of Introduced and Invasive Species http://www.griis.org/

Install

Stable CRAN version

install.packages("originr")

Development version

remotes::install_github("ropensci/originr")

library("originr")

EOL invasive species datasets

Datasets included:

• gisd100 - 100 of the World's Worst Invasive Alien Species (Global Invasive Species Database) http://eol.org/collections/54500
• gisd - Global Invasive Species Database 2013 http://eol.org/collections/54983
• isc - Centre for Agriculture and Biosciences International Invasive Species Compendium (ISC) http://eol.org/collections/55180
• daisie - Delivering Alien Invasive Species Inventories for Europe (DAISIE) Species List http://eol.org/collections/55179
• i3n - IABIN Invasives Information Network (I3N) Species http://eol.org/collections/55176
• mineps - Marine Invaders of the NE Pacific Species http://eol.org/collections/55331

An example using mineps

eol(name='Ciona intestinalis', dataset='mineps')

Native Species Resolver

nsr("Pinus ponderosa", "United States")

Global Invasive Species Database

sp <- c("Carpobrotus edulis", "Rosmarinus officinalis")
gisd(sp)

Flora Europaea

flora_europaea("Lavandula stoechas")

Meta

• Please report any issues or bugs.
• License: MIT
• Get citation information for originr in R doing citation(package = 'originr')
• Please note that this package is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

ropensci/originr documentation built on May 18, 2022, 5:39 p.m.