knitr::opts_chunk$set( comment = "#>", collapse = TRUE, warning = FALSE, message = FALSE )
rif
is an R wrapper for the Neuroscience Information Framework (NIF) APIs.
Stable rif
version from CRAN
install.packages("rif")
Or, the development version from Github
devtools::install_github("ropensci/rif")
library("rif")
out <- rif_summary("cellular") head(out$result$federationSummary$results)
List NIF query categories
rif_query_categories()
Search for vocabulary terms
vocabulary_search("cell", limit = 3)
Break up text into various things
text <- "Lorem ipsum inceptos dolor nisi torquent porttitor donec, blandit scelerisque mattis cras quis mi, aliquam sagittis. Convallis placerat commodo imperdiet varius nunc tempus urna vitae ultrices tristique eu mi ornare velit donec, posuere laoreet pretium vitae porta augue porta feugiat in sapien egestas. Quam odio nullam pulvinar litora curabitur amet lacus sociosqu gravida ligula molestie dui netus fusce bibendum scelerisque, dictum malesuada proin elit etiam aliquam, mattis euismod donec nisl facilisis." text <- gsub("\n", "", text)
lexical_sentences(text)
head(lexical_chunks(text))
head(lexical_entities(text))
Search
literature_search(query = "cellular", count = 5)
Get retractions
out <- literature_retractions() out[1:20]
Then get info on some articles
arts <- literature_pmid(pmid = out[1:2]) lapply(arts, "[[", "title")
Search for data
out <- federation_search("cellular") out$query head(out$result$results)
Get some data
out <- federation_data(id = "nlx_152871-2") out$result$result
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.