Function name | What it does | Source | ----------- | ----------- | ----------- | children | Get direct children | NCBI, ITIS | classification | Upstream classification | NCBI, ITIS, Tropicos, EOL, GBIF, NBN | comm2sci | Get scientific from common names | EOL, NCBI, ITIS, Tropicos | downstream | Downstream taxa to specified rank | ITIS, GBIF | get_ids | Get taxonomic identifiers | NCBI, ITIS, Tropicos, EOL, GBIF, NBN | resolve | Resolve names using many resolvers | GNR, iPlant | gnr_resolve | Resolve names using Global Names Resolver | GNR | tol_resolve | Resolve names using any resolver | TOL | iplant_resolve | iPlant name resolution| iPlant | sci2comm | Get common from scientific names | EOL, NCBI, ITIS | synonyms | Retrieve synonyms given input names/identifiers | NCBI, ITIS, Tropicos | upstream | Retrieve upstream taxa given names/identifiers | ITIS | lowest_common | Retrieve the lowest common taxon and rank for a given taxon name or ID | ITIS, GBIF, TOL, NCBI | genbank2uid | Get NCBI taxonomy UID from GenBankID | NCBI | tax_name | Get taxonomic names for a given rank | NCBI, ITIS | tax_rank | Get rank for a given taxonomic name | BOLD, EOL, GBIF, NATSERV, NBN, TOL, TROPICOS, ITIS, NCBI, WORMS | tpl_get | Get The Plant List csv files | TPL |

Acronyms



ropensci/taxize documentation built on Jan. 25, 2024, 6:49 p.m.