In ropenscilabs/spenv: Add Environmental Data to Spatial Data

spenv

knitr::opts_chunk$set(
  comment = "#>",
  collapse = TRUE,
  warning = FALSE,
  message = FALSE
)

spenv - add environmental data to spatial data

Docs: https://sckott.github.io/spenv/

sp_mutate - get env data for occ data input - not ready yet
sp_extract_gridded - extract env gridded data
sp_extract_pt - extract env point data
sp_query - query for env data - not ready yet
find_locs - find locations/stations/etc. based on occ data input - internal fxn used in sp_mutate

High priority: There are a set of data sources for environmental data, some of which are high priority as determined by perhaps data quality, coverage, etc.
- temperature, chlorophyll, ...
Available in R: Then there are a set of data sources that are already available in R.
We should identify the set of high priority data sources that are not yet available in R, and make them so.

List of datasources on Google Sheets

I want data...

for this bounding box for this temporal range and spatial resolution
that is of a certain license, because:
- I want only open data, e.g., CC0
- I want data I can redistribute
- I want data that I can purchase or resell

remotes::install_github("sckott/spenv")

library("spenv")

file <- system.file("examples", "obis_mola_mola.csv", package = "spenv")
dat <- read.csv(file)
head(dat)

res <- sp_extract_pt(x = dat[1:10,], radius = 100)
res[[1]]

library("spocc")
res <- occ(query = 'Mola mola', from = 'obis', limit = 200)
res_df <- occ2df(res)
out <- sp_extract_gridded(res_df)
head(out)

Map it

"map"

Please report any issues or bugs.
License: MIT
Get citation information for spenv in R doing citation(package = 'spenv')
Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.