importdata: Data import and pre-process

In roqe/T2GA: Pathway Analysis Tools for Quantitative Proteomic Data

Description

This function removes NA, replaces extreme values, and standardizes the data. It also map the data with uniprot identifiers to ensp idnetifiers.

Usage

importdata(fileName1, fileName2 = data.frame(), outth = 10, typ = "exp")

Arguments

fileName1	Expression data with Uniprot identifiers.
fileName2	Expression data with Uniprot identifiers, optional for time-course data
outth	Outlier threshold, default is 10.
type	data type, options: "exp" for expression values, "pv" for p-values, default is "exp"

Examples

dat1=importdata(TCR_5min)
dat2=importdata(TCR_5min,TCR_15min)

roqe/T2GA documentation built on March 9, 2021, 9:38 p.m.