Files in rorynolan/autothresholdr
An R Port of the 'ImageJ' Plugin 'Auto Threshold'

.DS_Store
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/autothresholdr.R R/class_constructors.R R/stack_thresh.R R/thresh.R R/utils.R README.Rmd README.md
_pkgdown.yml
appveyor.yml
autothresholdr.Rproj
codecov.yml
cran-comments.md
docs/CONDUCT.html
docs/LICENSE-text.html
docs/articles/finding-thresholds.html
docs/articles/finding-thresholds_files/figure-html/plot-high-low-1.png
docs/articles/index.html
docs/articles/thresholding-image-stacks.html
docs/articles/thresholding-image-stacks_files/figure-html/first-3-frames-1.png
docs/articles/thresholding-image-stacks_files/figure-html/last-3-frames-1.png
docs/articles/thresholding-image-stacks_files/figure-html/naiive-first-3-frames-1.png
docs/articles/thresholding-image-stacks_files/figure-html/naiive-last-3-frames-1.png
docs/articles/thresholding-image-stacks_files/figure-html/sometimes-sometimes-not-1.png
docs/articles/thresholding-image-stacks_files/figure-html/stack-threshs-1.png
docs/articles/thresholding-image-stacks_files/figure-html/stack-threshs-2.png
docs/articles/thresholding-images.html
docs/articles/thresholding-images_files/figure-html/guess twenty-1.png
docs/articles/thresholding-images_files/figure-html/the image-1.png
docs/articles/thresholding-images_files/figure-html/thresh mask apply-1.png
docs/articles/thresholding-images_files/figure-html/thresh mask apply-2.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/arr_mask.html
docs/reference/auto_thresh-1.png
docs/reference/auto_thresh-2.png
docs/reference/auto_thresh-3.png
docs/reference/auto_thresh.html
docs/reference/figures/logo.png
docs/reference/index.html
docs/reference/mean_stack_thresh-1.png
docs/reference/mean_stack_thresh-2.png
docs/reference/mean_stack_thresh-3.png
docs/reference/mean_stack_thresh-4.png
docs/reference/mean_stack_thresh.html
docs/reference/med_stack_thresh-1.png
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docs/reference/med_stack_thresh.html
docs/reference/stack_threshed_img.html
docs/reference/th.html
docs/reference/threshed_arr.html
index.Rmd index.md
inst/.gitignore
inst/CITATION
inst/extdata/50.tif
inst/extdata/eg.tif
inst/extdata/fiji_eg.tif
inst/include/autothresholdr.h
inst/include/autothresholdr_RcppExports.h
junk/autothresholdr.png
junk/inst_java/Auto_Threshold_R.jar
junk/java/Auto_Threshold_R.class
junk/java/Auto_Threshold_R.jar
junk/java/Auto_Threshold_R.java
junk/java/Auto_Threshold_original.java
junk/sticker.R
junk/sticker.png
man/arr_mask.Rd man/auto_thresh.Rd
man/figures/logo.png
man/mean_stack_thresh.Rd man/med_stack_thresh.Rd man/stack_threshed_img.Rd man/th.Rd man/threshed_arr.Rd revdep/README.md
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revdep/checks.noindex/detrendr/old/libraries.txt
revdep/checks.noindex/libraries.csv
revdep/checks.noindex/nandb/nandb_1.0.1.tar.gz
revdep/checks.noindex/nandb/new/libraries.txt
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revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/startup.Rs
revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat.R
revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat.Rout.fail
revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-brightness.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-cc_brightness.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-cc_number.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-class_constructors.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-cross_var-examples.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-filters.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-number.R revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-utils.R
revdep/checks.noindex/nandb/old/libraries.txt
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revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat.R
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revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-brightness.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-cc_brightness.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-cc_number.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-class_constructors.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-cross_var-examples.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-filters.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-number.R revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/testthat/test-utils.R
revdep/data.sqlite
revdep/library.noindex/autothresholdr/old/autothresholdr/CITATION
revdep/library.noindex/autothresholdr/old/autothresholdr/DESCRIPTION
revdep/library.noindex/autothresholdr/old/autothresholdr/INDEX
revdep/library.noindex/autothresholdr/old/autothresholdr/Meta/Rd.rds
revdep/library.noindex/autothresholdr/old/autothresholdr/Meta/features.rds
revdep/library.noindex/autothresholdr/old/autothresholdr/Meta/hsearch.rds
revdep/library.noindex/autothresholdr/old/autothresholdr/Meta/links.rds
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revdep/library.noindex/autothresholdr/old/autothresholdr/NAMESPACE
revdep/library.noindex/autothresholdr/old/autothresholdr/NEWS.md
revdep/library.noindex/autothresholdr/old/autothresholdr/R/autothresholdr
revdep/library.noindex/autothresholdr/old/autothresholdr/R/autothresholdr.rdb
revdep/library.noindex/autothresholdr/old/autothresholdr/R/autothresholdr.rdx
revdep/library.noindex/autothresholdr/old/autothresholdr/doc/autothresholdr.R revdep/library.noindex/autothresholdr/old/autothresholdr/doc/autothresholdr.Rmd
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revdep/library.noindex/autothresholdr/old/autothresholdr/doc/index.html
revdep/library.noindex/autothresholdr/old/autothresholdr/extdata/50.tif
revdep/library.noindex/autothresholdr/old/autothresholdr/extdata/eg.tif
revdep/library.noindex/autothresholdr/old/autothresholdr/extdata/fiji_eg.tif
revdep/library.noindex/autothresholdr/old/autothresholdr/help/AnIndex
revdep/library.noindex/autothresholdr/old/autothresholdr/help/aliases.rds
revdep/library.noindex/autothresholdr/old/autothresholdr/help/autothresholdr.rdb
revdep/library.noindex/autothresholdr/old/autothresholdr/help/autothresholdr.rdx
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revdep/library.noindex/autothresholdr/old/autothresholdr/html/00Index.html
revdep/library.noindex/autothresholdr/old/autothresholdr/html/R.css
revdep/library.noindex/autothresholdr/old/autothresholdr/include/autothresholdr.h
revdep/library.noindex/autothresholdr/old/autothresholdr/include/autothresholdr_RcppExports.h
revdep/library.noindex/autothresholdr/old/autothresholdr/libs/autothresholdr.so
revdep/library.noindex/autothresholdr/old/autothresholdr/libs/autothresholdr.so.dSYM/Contents/Info.plist
revdep/library.noindex/autothresholdr/old/autothresholdr/libs/autothresholdr.so.dSYM/Contents/Resources/DWARF/autothresholdr.so
revdep/problems.md
src/.gitignore
src/AutoThreshold.cpp
src/RcppExports.cpp
src/pillar_stats.cpp
tests/testthat.R tests/testthat/test_auto_thresh_methods.R tests/testthat/test_stack_thresh.R tests/testthat/test_thresh.R tests/testthat/test_utils.R
vignettes/.gitignore
vignettes/finding-thresholds.Rmd vignettes/thresholding-image-stacks.Rmd vignettes/thresholding-images.Rmd
rorynolan/autothresholdr documentation built on Nov. 8, 2018, 1 a.m.