Files in rosscm/FEDUP
Fisher's Test for Enrichment and Depletion of User-Defined Pathways
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/issue_template.md
.github/workflows/R-CMD-check.yaml
.github/workflows/check-bioc.yml
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/fedup.R
R/femap.R
R/genes.R
R/pathways.R
R/plot.R
README.Rmd
README.md
appveyor.yml
data/geneDouble.rda
data/geneMulti.rda
data/geneSingle.rda
data/pathwaysGMT.rda
data/pathwaysTXT.rda
data/pathwaysXLSX.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/fedup_doubleTest.html
docs/articles/fedup_doubleTest_files/header-attrs-2.9/header-attrs.js
docs/articles/fedup_mutliTest.html
docs/articles/fedup_mutliTest_files/header-attrs-2.9/header-attrs.js
docs/articles/fedup_singleTest.html
docs/articles/fedup_singleTest_files/header-attrs-2.9/header-attrs.js
docs/articles/figures/fedupDotPlot-1.png
docs/articles/figures/fedupDotPlot_sum-1.png
docs/articles/figures/fedupDotplot_signCol-1.png
docs/articles/figures/fedupEM_geneDouble.png
docs/articles/figures/fedupEM_geneMulti.png
docs/articles/figures/fedupEM_geneSingle.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/figures/fedup.png
docs/figures/fedupDotplot-1.png
docs/figures/fedupEM.png
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/geneDouble.html
docs/reference/geneMulti.html
docs/reference/geneSingle.html
docs/reference/index.html
docs/reference/pathwaysGMT.html
docs/reference/pathwaysTXT.html
docs/reference/pathwaysXLSX.html
docs/reference/plotDotPlot.html
docs/reference/plotFemap.html
docs/reference/prepInput.html
docs/reference/readPathways.html
docs/reference/runFedup.html
docs/reference/writeFemap.html
docs/reference/writePathways.html
inst/NEWS.Rd
inst/extdata/Human_Reactome_November_17_2020_symbol.gmt
inst/extdata/NIHMS1587165-supplement-1587165_Sup_Tab_2.txt
inst/extdata/SAFE_terms.xlsx
inst/figures/fedup.png
inst/figures/fedupDotplot-1.png
inst/figures/fedupEM.png
inst/script/genes.R
inst/script/pathwaysGMT.R
inst/script/pathwaysTXT.R
inst/script/pathwaysXLSX.R
man/geneDouble.Rd
man/geneMulti.Rd
man/geneSingle.Rd
man/pathwaysGMT.Rd
man/pathwaysTXT.Rd
man/pathwaysXLSX.Rd
man/plotDotPlot.Rd
man/plotFemap.Rd
man/prepInput.Rd
man/readPathways.Rd
man/runFedup.Rd
man/writeFemap.Rd
man/writePathways.Rd
tests/testthat.R
tests/testthat/test_1_pathways.R
tests/testthat/test_2_genes.R
tests/testthat/test_3_enrichment.R
tests/testthat/test_4_plot.R
tests/testthat/test_5_em.R
vignettes/fedup_doubleTest.rmd
vignettes/fedup_mutliTest.rmd
vignettes/fedup_singleTest.rmd
vignettes/figures/fedupEM_geneDouble.png
vignettes/figures/fedupEM_geneMulti.png
vignettes/figures/fedupEM_geneSingle.png
