writeFemap: Writes an enrichment dataset file for use in Cytoscape...

Description Usage Arguments Value Examples

View source: R/femap.R

Description

Writes an enrichment dataset file for use in Cytoscape EnrichmentMap.

Usage

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writeFemap(results, resultsFolder)

Arguments

results

(list) list with ouput results from runFedup

resultsFolder

(char) name of folder to store result file(s)

Value

Table of pathway enrichment and depletion results formatted as a 'Generic results file'. Rows represent tested pathways. Columns represent:

Examples

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# Load example data
data(geneDouble)
data(pathwaysGMT)
# Run fedup
fedupRes <- runFedup(geneDouble, pathwaysGMT)
# Write out results to temp folder
resultsFolder <- tempdir()
writeFemap(fedupRes, resultsFolder)

rosscm/FEDUP documentation built on July 15, 2021, 2:18 a.m.