Description Usage Arguments Value Author(s) Examples
Applies dimensionality reduction methods to p-adic transformed data from scRNAseq.
1 2 | padicDimred(data, log2Transform = FALSE, reg_eval = TRUE, method = "none",
ndims = 2, tsne.iter = 1000, ncores = 1)
|
data |
(numeric) data matrix with features as rows and items as columns. |
log2Transform |
(logica) Apply log2 transformation to scRNAseq data. |
method |
(character) Method or list of methods for application of dimensionality reduction. |
tsne.iter |
(numeric) Number of iterations for tsne or Rtsne. |
ncores |
(Integer) Number of cores. Default is 1. |
reg.eval |
(logical) Compute R^2 to evaluate fitting of logarithmic approximation. Default is TRUE. |
ndim |
(numeric) Number of components to extract from dimensionaity reduction methods. |
....
Ivan Imaz ii236@cam.ac.uk
1 | test ...
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