padicDimred: Applies dimensionality reduction methods to p-adic...
In rosshandler/padicRNA: Application of p-adic metric

Applies dimensionality reduction methods to p-adic transformed data from scRNAseq.

1 2	padicDimred(data, log2Transform = FALSE, reg_eval = TRUE, method = "none", ndims = 2, tsne.iter = 1000, ncores = 1)

`data`	(numeric) data matrix with features as rows and items as columns.
`log2Transform`	(logica) Apply log2 transformation to scRNAseq data.
`method`	(character) Method or list of methods for application of dimensionality reduction.
`tsne.iter`	(numeric) Number of iterations for tsne or Rtsne.
`ncores`	(Integer) Number of cores. Default is 1.
`reg.eval`	(logical) Compute R^2 to evaluate fitting of logarithmic approximation. Default is TRUE.
`ndim`	(numeric) Number of components to extract from dimensionaity reduction methods.