Man pages for rpatin/segclust2d
Bivariate Segmentation/Clustering Methods and Tools
| add_covariates | Covariate Calculations |
| angular_speed | Calculate angular speed along a path |
| apply_rowSums | apply_rowSums |
| apply_subsampling | Internal function for subsampling |
| argcheck_diag.var | Check for argument 'diag.var' |
| argcheck_Kmax | Check for argument 'Kmax' |
| argcheck_lmin | Check for argument 'lmin' |
| argcheck_ncluster | Check for argument 'ncluster' |
| argcheck_ordering | Check for argument 'order' |
| argcheck_order.var | Check for argument 'order.var' |
| argcheck_scale.variable | Check for argument 'scale.variable' |
| argcheck_segclust | Check for argument 'ncluster' and 'nseg' |
| argcheck_segmentation | Check for argument 'nseg' |
| argcheck_seg.var | Check for argument 'seg.var' |
| argcheck_type_coord | Check for deprecated 'type' and 'coord.names' argument |
| arma_repmat | arma_repmat |
| augment | Generic function for augment |
| bisig_plot | bisig_plot draws the plots of the bivariate signal on the... |
| calc_BIC | Calculate BIC |
| calc_dist | Calculate distance between locations |
| calc_speed | Calculate speed along a path |
| calc_stat_states | Calculate state statistics |
| check_repetition | Check for repetition in the series |
| choose_kmax | Finding best segmentation with a different threshold S |
| chooseseg_lavielle | Internal Function for choosing optimal number of segment |
| colsums_sapply | colsums_sapply |
| cumsum_cpp | cumsum_cpp |
| DynProg | DynProg computes the change points given a cost matrix matD... |
| DynProg_algo_cpp | DynProg_algo_cpp |
| EM.algo_simultanee | EM.algo_simultanee calculates the MLE of phi for given... |
| EM.algo_simultanee_Cpp | EM.algo_simultanee calculates the MLE of phi for given... |
| EM.init_simultanee | EM.init_simultanee proposes an initial value for the EM... |
| Estep_simultanee | Estep_simultanee computes posterior probabilities and... |
| find_mu_sd | Find mean and standard deviation of segments |
| Gmean_simultanee | Gmean_simultanee calculates the cost matrix for a... |
| Gmixt_algo_cpp | Gmixt_algo_cpp |
| Gmixt_simultanee | Gmixt_simultanee calculates the cost matrix for a... |
| Gmixt_simultanee_fullcpp | Gmixt_simultanee_fullcpp |
| hybrid_simultanee | 'hybrid_simultanee' performs a simultaneous seg - clustering... |
| initialisePhi | initialisePhi is the constructor for a set of parameters for... |
| likelihood | Generic function for likelihood |
| logdens_simultanee | logdens_simultanee_cpp |
| map_segm | 'plot_segm' plot segmented movement data on a map. |
| matrixRupt | matrixRupt transforms a vector of change point into a... |
| Mstep_simultanee | Mstep_simultanee computes the MLE within the EM framework |
| Mstep_simultanee_cpp | Mstep_simultanee computes the MLE within the EM framework |
| neighborsbis | neighbors tests whether neighbors of point k,P can be used to... |
| plot_segm | Plot segmentation on time-serie |
| plot_states | Plot states statistics |
| prepare_HMM | Prepare HMM output for proper comparison plots |
| prepare_shiftfit | Prepare shiftfit output for proper comparison plots |
| prep_segm | Find segment and states for a Picard model |
| prep_segm_HMM | Internal function for HMM |
| prep_segm_shiftfit | Internal function for HMM |
| relabel_states | Relabel states of a segmentation/clustering output |
| repmat | repmat repeats a matrix |
| ruptAsMat | ruptAsMat is an internal function to transform a vector... |
| segclust | Segmentation/Clustering of movement data - Generic function |
| segclust2d | segclust2d: tools for segmentation of animal GPS movement... |
| segclust_internal | Internal segmentation/clustering function |
| segmap_list | 'segmap_list' create maps with a list of object of... |
| segmentation | Segmentation of movement data - Generic function |
| segmentation-class | segmentation class description |
| simulmode | Simulations of behavioural mode |
| simulshift | Simulations of home-range shift |
| spatial_angle | Calculate spatial angle along a path |
| stat_segm | Calculate statistics on a given segmentation |
| stat_segm_HMM | Get segment statistic for HMM model |
| stat_segm_shiftfit | Get segment statistic for shiftfit model |
| subsample_rename | Internal function for subsampling |
| test_data | Test function generating fake data |
| wrap_dynprog_cpp | DynProg Rcpp DynProg computes the change points given a cost... |
