get_asso: Get GWAS associations for a given region

In rqtl/GWAScat: NHGRI-EBI GWAS Catalog of Summary Statistics

Description

Get GWAS associations for a given region

Usage

get_asso(chr, bp_lower = NULL, bp_upper = NULL, study = NULL,
  p_lower = NULL, p_upper = NULL, start = NULL, size = NULL)

Arguments

chr	chromosome number
bp_lower	Lower endpoint of basepairs initerval
bp_upper	Upper endpoint of basepairs initerval
study	Restrict to a particular study
p_lower	Lower bound on p-values
p_upper	Upper bound of p-values
start	First record to retrieve (starting at 0)
size	Maximum number of results to retrieve

Value

Data frame of associations

See Also

get_variant(), get_trait_asso()

Examples

result <- get_asso(chr=19, bp_lower=19200000, bp_upper=19300000)

rqtl/GWAScat documentation built on Nov. 5, 2019, 4:15 a.m.