plot_sdp: plot strain distribution patterns for SNPs

In rqtl/qtl2: Quantitative Trait Locus Mapping in Experimental Crosses

plot strain distribution patterns for SNPs

Description

plot the strain distribution patterns of SNPs using tracks of tick-marks for each founder strain

Usage

plot_sdp(pos, sdp, strain_labels = names(qtl2::CCcolors), ...)

Arguments

pos	vector of SNP positions
sdp	vector of strain distribution patterns (as integers)
strain_labels	names of the strains
...	additional graphic arguments

Details

Additional arguments, such as xlab, ylab, xlim, and main, are passed via ...; also bgcolor to control the color of the background, and col and lwd to control the color and thickness of the tick marks.

Value

None.

See Also

calc_sdp(), invert_sdp()

Examples

n_tick <- 50
plot_sdp(runif(n_tick, 0, 100), sample(0:255, n_tick, replace=TRUE))

rqtl/qtl2 documentation built on March 20, 2024, 6:35 p.m.