run_getXcovar: Get X covariates and write to file

In rqtl/qtl2cl: Command-Line Interface for R/qtl2

Get X covariates and write to file

Description

Read cross from RDS file, determine X chromosome covariates, and write to another RDS file.

Usage

run_getXcovar(input_file, output_file, compress = FALSE)

Arguments

input_file	Input RDS file for cross
output_file	Output RDS file for X chromosome covariates
compress	If TRUE, save a compressed RDS file (smaller but slower).

Examples

input_file <- paste0("https://github.com/rqtl/qtl2data/",
                     "blob/master/B6BTBR/b6btbr.zip")
## Not run: cross2rds(input_file, "b6btbr.rds")
## Not run: run_getXcovar("b6btbr.rds", "b6btbr_xcovar.rds")

rqtl/qtl2cl documentation built on Oct. 13, 2024, 1:11 a.m.