API for rr1859/R.4Cker
Analysis of 4C-seq (circularized chromosome conformation capture) data
| Global functions | |
|---|---|
| buildAdaptiveWindowsCis | Source code |
| buildAdaptiveWindowsTrans | Source code |
| bwMax | Source code |
| cisAnalysis | Source code |
| createR4CkerObjectFromDFs | Source code |
| createR4CkerObjectFromFiles | Source code |
| differentialAnalysis | Source code |
| div_gm | Source code |
| generateSyntheticSamples | Source code |
| getWindowCounts | Source code |
| ineqfunCis | Source code |
| ineqfunTrans | Source code |
| merge_windows | Source code |
| nearBaitAnalysis | Source code |
| normalizeCounts | Source code |
| overlappingWindows | Source code |
| parameterEstimationCis | Source code |
| parameterEstimationTrans | Source code |
| removePCR | Source code |
| startingValuesCis | Source code |
| startingValuesTrans | Source code |
| transAnalysis | Source code |
| trimOtherStates | Source code |
| validateParametersCis | Source code |
| viterbi3State | Source code |
