API for rr1859/R.4Cker
Analysis of 4C-seq (circularized chromosome conformation capture) data

Global functions
buildAdaptiveWindowsCis Source code
buildAdaptiveWindowsTrans Source code
bwMax Source code
cisAnalysis Source code
createR4CkerObjectFromDFs Source code
createR4CkerObjectFromFiles Source code
differentialAnalysis Source code
div_gm Source code
generateSyntheticSamples Source code
getWindowCounts Source code
ineqfunCis Source code
ineqfunTrans Source code
merge_windows Source code
nearBaitAnalysis Source code
normalizeCounts Source code
overlappingWindows Source code
parameterEstimationCis Source code
parameterEstimationTrans Source code
removePCR Source code
startingValuesCis Source code
startingValuesTrans Source code
transAnalysis Source code
trimOtherStates Source code
validateParametersCis Source code
viterbi3State Source code
rr1859/R.4Cker documentation built on July 25, 2018, 11:31 p.m.