Description Usage Arguments Value
Scans over a list of input files and annotates FAME standards
1 2 3 | Find_FAME_Standards(inputFileList, FAME_Frame = system.file("extdata",
"FIND_FAME_FRAME.txt", package = "CooperR2DGC"), RT1Penalty = 1,
RT2Penalty = 10, similarityCutoffWarningThreshold = 80)
|
inputFileList |
Vector of file paths to scan for FAME standards |
RT1Penalty |
Penalty used for first retention time errors. Defaults to 1. |
RT2Penalty |
Penalty used for first retention time errors. Defaults to 10. |
similarityCutoffWarningThreshold |
Similarity score threshold at which to print a warning for user to double check FAME peak for a sample. Defaults to 85. |
FAME_frame |
A parsed FAME standard reference file (find at system.file("extdata", "FIND_FAME_FRAME.txt", package="CooperR2DGC")) |
Will write out new files with properly annotated FAME standards with the extention _FAME_appended.txt added to the end of the file path
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