MS Data

addAMDISPeaks	Add AMDIS peak detection results
addChromaTOFPeaks	Add ChromaTOF peak detection results
addXCMSPeaks	addXCMSPeaks
betweenAlignment	Data Structure for "between" alignment of many GCMS samples
calcTimeDiffs	Calculate retention time shifts from profile alignments
clusterAlignment	Data Structure for a collection of all pairwise alignments of...
compress-peaksAlignment-method	Compression method for peaksAlignment object
compress-progressiveAlignment-method	Compress method for progressiveAlignment
corPrt	Retention Time Penalized Correlation
decompress-peaksAlignment-method	Decompression method for peaksAlignment object
decompress-progressiveAlignment-method	Compress method for progressiveAlignment
deDuper	deDuper
distToLib	distToLib
dp	Dynamic programming algorithm, given a similarity matrix
dynRT	dynRT
eitherMatrix-class	A class description
exportSpectra	exportSpectra
gatherInfo	Gathers abundance informations from an alignment
headToTailPlot	Head to tail plot
importSpec	importSpec
imputePeaks	Imputatin of locations of peaks that were undetected
matchSpec	matchSpec
multipleAlignment-class	Data Structure for multiple alignment of many GCMS samples
ndpRT	Retention Time Penalized Normalized Dot Product
normDotProduct	Normalized Dot Product
parseChromaTOF	Parser for ChromaTOF files
parseELU	Parser for ELU files
peaksAlignment-class	Data Structure for pairwise alignment of 2 GCMS samples
peaksDataset	Data Structure for raw GCMS data and peak detection results
plotAlignedFrags	plotAlignedFrags
plotAlignment-peaksAlignment-method	plotAlignment
plotChrom-peaksDataset-method	Plotting functions for GCMS data objects
plotClustAlignment-clusterAlignment-method	plotClustAlignment
plotFrags	plotFrags
plotImage	Plot of images of GCMS data
progressiveAlignment-class	Data Structure for progressive alignment of many GCMS samples
retFatMatrix	retFatMatrix
rmaFitUnit	Fits a robust linear model (RLM) for one metabolite
show-multipleAlignment-method	Store the raw data and optionally, information regarding...