read_VECT: Read and write GRASS vector object files

In rsbivand/rgrass7: Interface Between 'GRASS' Geographical Information System and 'R'

Read and write GRASS vector object files

Description

read_VECT moves one GRASS vector object file with attribute data through a temporary GeoPackage file to a terra::SpatVector object; write_VECT moves a terra::SpatVector object through a temporary GeoPackage file to a GRASS vector object file. vect2neigh returns neighbour pairs with shared boundary length as described by Markus Neteler, in https://stat.ethz.ch/pipermail/r-sig-geo/2005-October/000616.html. cygwin_clean_temp can be called to try to clean the GRASS mapset-specific temporary directory under cygwin.

Usage

read_VECT(
  vname,
  layer = "",
  proxy = FALSE,
  use_gdal_grass_driver = TRUE,
  type = NULL,
  flags = "overwrite",
  Sys_ignore.stdout = FALSE,
  ignore.stderr = get.ignore.stderrOption()
)

write_VECT(
  x,
  vname,
  flags = "overwrite",
  ignore.stderr = get.ignore.stderrOption()
)

vInfo(vname, layer, ignore.stderr = NULL)

vColumns(vname, layer, ignore.stderr = NULL)

vDataCount(vname, layer, ignore.stderr = NULL)

vect2neigh(
  vname,
  ID = NULL,
  ignore.stderr = NULL,
  remove = TRUE,
  vname2 = NULL,
  units = "k"
)

Arguments

vname	A GRASS vector file name.
layer	a layer name (string); if missing the first layer will be used.
proxy	Default is FALSE. Set as TRUE if you need a SpatVectorProxy object.
use_gdal_grass_driver	Default TRUE. The standalone GDAL-GRASS driver for the vector format will be used if it is installed. The advantage is that no intermediate file needs to be written from GRASS GIS and subsequently read into R; instead the vector layer is read directly from the GRASS GIS database. Please read the Note further below!.
type	override type detection when multiple types are non-zero, passed to v.out.ogr.
flags	Character vector containing additional optional flags and/or options for v.in.ogr, particularly "o" and "overwrite".
Sys_ignore.stdout	Passed to system.
ignore.stderr	default the value set by set.ignore.stderrOption; NULL, taking the value set by set.ignore.stderrOption, can be set to TRUE to silence system() output to standard error; does not apply on Windows platforms.
x	A SpatVector object moved to GRASS.
ID	A valid DB column name for unique identifiers (optional).
remove	default TRUE, remove copied vectors created in vect2neigh.
vname2	If on a previous run, remove was FALSE, the name of the temporary vector may be given to circumvent its generation.
units	default "k"; see GRASS 'v.to.db' manual page for alternatives.

Value

read_VECT imports a GRASS vector layer into a SpatVector or SpatVectorProxy object. vect2neigh returns a data frame object with left and right neighbours and boundary lengths, also given class GRASSneigh and spatial.neighbour (as used in spdep). The incantation to retrieve the neighbours list is sn2listw(vect2neigh())$neighbours, and to retrieve the boundary lengths: sn2listw(vect2neigh())$weights. The GRASSneigh object has two other useful attributes: external is a vector giving the length of shared boundary between each polygon and the external area, and total giving each polygon's total boundary length.

Note

Be aware that the GDAL-GRASS driver may have some issues for vector data. In our experience, the error and warning messages for vector data can be ignored. Further, the returned metadata about the coordinate reference system may currently be incomplete, e.g. it may miss the EPSG code.

Author(s)

Roger S. Bivand, e-mail: [e-mail]

Examples

# Run example if in active GRASS nc_basic_spm_grass7 location
run <- FALSE
if (nchar(Sys.getenv("GISRC")) > 0 &&
    read.dcf(Sys.getenv("GISRC"))[1, "LOCATION_NAME"] == "nc_basic_spm_grass7") {
  run <- TRUE
}

# Store original environment variable settings
GV <- Sys.getenv("GRASS_VERBOSE")
Sys.setenv("GRASS_VERBOSE" = 0)
ois <- get.ignore.stderrOption()
set.ignore.stderrOption(TRUE)

if (run) {
  # Create a new mapset
  meta <- gmeta()
  location_path <- file.path(meta$GISDBASE, meta$LOCATION_NAME)
  previous_mapset <- meta$MAPSET
  example_mapset <- "RGRASS_EXAMPLES"
  execGRASS("g.mapset", "c", mapset = example_mapset)

  # Report basic metadata about the schools dataset
  execGRASS("v.info", map = "schools", layer = "1")
  print(vInfo("schools"))

  # Read/write as a SpatVector
  schs <- read_VECT("schools")
  print(summary(schs))

  try({
    write_VECT(schs, "newsch", flags = c("o", "overwrite"))
  })
  schs <- read_VECT("schools", use_gdal_grass_driver = FALSE)

  write_VECT(schs, "newsch", flags = c("o", "overwrite"))
  execGRASS("v.info", map = "newsch", layer = "1")

  nschs <- read_VECT("newsch")
  print(summary(nschs))

  print(all.equal(names(nschs), as.character(vColumns("newsch")[, 2])))

  # Show metadata for the roadsmajor dataset and read as spatVector
  print(vInfo("roadsmajor"))
  roads <- read_VECT("roadsmajor")
  print(summary(roads))
}

# not run: vect2neigh() currently writes 3 new data sources in the PERMANENT
# mapset, despite this mapset not being the active one.
if (FALSE) {
  cen_neig <- vect2neigh("census")
  str(cen_neig)
}

# Cleanup the previously created datasets
if (run) {
  execGRASS(
    "g.remove",
    flags = "f",
    name = c("newsch", "newsch1"),
    type = "vector"
  )
  execGRASS("g.mapset", mapset = previous_mapset)
  if (example_mapset != previous_mapset) {
    unlink(file.path(location_path, example_mapset), recursive = TRUE)
  }
}

# Restore environment variable settings
Sys.setenv("GRASS_VERBOSE" = GV)
set.ignore.stderrOption(ois)

rsbivand/rgrass7 documentation built on Nov. 3, 2024, 6:06 a.m.