package: Annotation package for TxDb object(s)

In rscharpf/TxDb.Hsapiens.UCSC.hg19.refGene: Annotation package for TxDb object(s)

Description

This package copies the layout of the TxDb.Hsapiens.UCSC.hg19.knownGene package available from Bioconductor. The only difference is that the TxDb object in this package is based on the refGene table from UCSC and not the knownGene table.

This package loads one or more TxDb objects. Such TxDb objects are an R interface to prefabricated databases contained by this package.

The names of any objects exposed by this package indicate the origin and resources exposed. So for example TxDb.Hsapiens.UCSC.hg19.refGene would be a TxDb object, of Homo sapiens data from UCSC build hg19 based on the refGene Track.

Note

This data package was made from resources at UCSC on 2015-08-20 (Thu, 20 Aug 2015) and based on the hg19 genome based on the refGene table

Author(s)

Savannah Speir

See Also

transcripts, transcriptsBy

Examples

## load the library
library(TxDb.Hsapiens.UCSC.hg19.refGene)
## list the contents that are loaded into memory
ls('package:TxDb.Hsapiens.UCSC.hg19.refGene')
## show the db object that is loaded by calling it's name
TxDb.Hsapiens.UCSC.hg19.refGene

rscharpf/TxDb.Hsapiens.UCSC.hg19.refGene documentation built on May 29, 2019, 3:18 p.m.