add_matrices | Matrix addition |
add_spaces | Add spaces between words in labels |
calc_expvar | Explained variance of a principal component |
check_multinorm | Test multivariate normality across groups |
check_normality | Test normality across groups |
check_spatialcorr | Test spatial autocorrelation of the residuals |
check_spatialcorr_nested | Test spatial autocorrelation of the residuals within islands |
check_variances | Test homoscedasticity of the residuals across groups |
cumulate_confusion_matrices | Cumulative confusion matrices |
dewlap_anova | Multiple analyses of variance (ANOVA) |
dewlap_biplot | Dewlap color space biplot |
dewlap_dfa | Discriminant Function Analysis (DFA) of dewlap color |
dewlap_dfa_global | Global Discriminant Function Analysis (DFA) of dewlap color |
dewlap_gls | Fit and analyze generalized least squares models |
dewlap_kruskal | Perform Kruskal Wallis test on each island |
dewlap_manova | Multivariate analysis of variance (MANOVA) of dewlap color |
dewlap_neural | Habitat classification with neural networks |
dewlap_neural_nested | Habitat classification with neural networks per island |
dewlap_permanova | Permutational multivariate analysis of variance (PERMANOVA)... |
df2rspec | Convert to 'rspec' with transposition |
do_boxplots | Boxplot of color metrics across islands and habitats |
install_dependencies | Install dependencies of the package |
linearize | Smooth reflectance artifacts |
make_dataset | Make spectral dataset |
matrix_contrasts | Matrix of contrast weights |
plot_color_space | Plot color in PC space |
plot_confusion_matrices | Plot neural network confusion matrices |
plot_eigenvalues | PCA eigenvalues |
plot_heatmap | Plot correlation between variables |
plot_neural_importance | Plot importance of variables in discriminating between... |
plot_neural_pvalues | Plot neural network classification |
plot_neural_spectrum | Plot importance of wavelengths in discriminating between... |
plot_neural_success | Plot neural network classification |
plot_pc1_brightness | Plot PC1 against mean reflectance |
plot_residuals | Plot residuals of dewlap color |
process_spectra | Process reflectance spectra |
save_svm_results | Save SVM output |
show_locations | Show geographical coordinates |
show_svm_params | Show SVM parameters |
spectral_pca | Principal Component Analysis of dewlap reflectance |
subset_habitats | Subset of the spectral dataset |
test_contrasts | Test (multiple) univariate contrasts |
test_multiContrasts | Test multivariate contrasts |
write_output | Save output |
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